I have probably done these checks well over 200 times...most, first time looks, some have been checked a dozen times or so.
I think that if you watch this video of the assembly of the WetHead boxer engine, it will let you see the number of points of contact between the rotor of the alternator where TDC is established and the Cam Alignment Jig where play shows up.
https://www.youtube.com/watch?v=R817so8zhUY
There is wear-in play in every one of these metal to metal power transfer points, small, but it shows up in the way of cam timing being different than when it was set perfectly at the factory.
Perfectly normal and is similar in every machine in the World.
Example in the bikes we're talking about
:
The front end of the crankshaft gears drive the clutch and the shaft in shaft counterbalance shaft. The LH valve train chain is driven from the crankshaft between the cylinders and the alternator with 102 links in the chain, and the RH cams are driven from the lower counterbalance shaft directly below the crank driven chain, and has 106 links. The chain and sprockets on the WetHead are traditional roller link chains on sprockets, but the ShiftHead has different cut gears and uses a multi-leaf link style chain.
Once the chain drive gets power out to the valve cover, there is an intermediate shaft gear that drives both the INT and EXH gear wheels, connected directly to the cams.
It doesn't surprise me a bit that everything wears in along this number of meshing gears and lengths of chain.